Dataset | Annotation |
25: MuAu-bc6_S4_L002_R1_001.fasta
5,447,693 sequences
format: fasta,
database:
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Info: uploaded fasta file
>NS500162:113:H2TNVAFXX:2:11101:14856:1013_1:N:0:4 | NCAGANTGTTGCAAAAGGCCGAGTACAATGCTGCTAGAGCCAACAAAGGGAGGCGTCAAGTTTCTTTCCAGCCTGGTGATTTGGTGTGGGTACATCTAAGGAAGGAGAGGTTTCCAGTGCAGCGGTATTCTAAGCTGGCTCCGCGTGGTG | >NS500162:113:H2TNVAFXX:2:11101:9494:1013_1:N:0:4 | NCTCCNCACCCAACTGACATTCTTATTCTTGGTGACATCCTATATACTTCTCCCTTTTAGGAAATTGCTCGTGGCCCATTCTGTCCAAATATTAGGAGTTTTTTGGACGATGTCATGAACTAAGCTTGAAATTTGCGCTCTGTTCCAAGTC | >NS500162:113:H2TNVAFXX:2:11101:12935:1013_1:N:0:4 | NTGAGNTACAAGATTTGTTCTTCGCCCATCCACATTCGAGGCATTTGATGAAGAGGTTCCCGTACGACGTCATCATGGACACCACGTACAAGAAAAATGAGTAAGATTTGGCTATTAAGCTCATTAGCTTATTGAATACGGTTTCGGTAA |
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36: Archive with clustering results from dataset 25
59,882,780 lines
format: zip,
database:
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37: Contigs from dataset 25 based on clustering
444,555 sequences
format: fasta,
database:
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>CL1Contig1 (365-6.5-2370) | GGTGTTCTTCCATGATGGATATCCGTCCGAGGCATTGGCCGGGTTATCTCCTGTGTTACG | CGGCCGCTTTCCAGAAGGATACCCGACCGGGTCTTCGACCGGGTCTTTGGCCGGGTGTTC | TCCTGGGCCGCCGCCTTAGGTTATTTTTGGTTATTTTTGTACCTTTTCTTTTAGGTTAGT | ATTTAAACCCTTCTTTTAGGTTTTAGAAGGGATCTGATCTTATCTTTTACTATTGTCAAG | TTAGAAAACTCTCAAGAGATTGGAGATTGAACTATTCTGTCAGAGATTGAAGTTCTGTAA |
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38: Log information of clustering based on dataset 25
13,963 lines
format: txt,
database:
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pipeline version: | d5204b9a1621 163 stable | This is clustering pipeline | GRAPH BASED CLUSTERING | ********************************************************************** |
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39: HTML summary of graph based clustering on MuAuL002R1 - dataset 25
223.3 KB
format: html,
database:
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45: FaJa-bc5_S3_L002_R1_001.fasta
6,544,578 sequences
format: fasta,
database:
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Info: uploaded fasta file
>NS500162:113:H2TNVAFXX:2:11101:11646:1013_1:N:0:3 | NTGTTNCTTCTTAACAACTCATGCTGTAACATTGGTTGCATTGTAAGCATGGAAACCATATCTTCCTGTGGAGTTTTACTACTTAAGGCGTCATCCACAACATTGGCTTTTCCCTGATGGTAGAGCAGTTCAATGTCGTAGTCCTTTAGC | >NS500162:113:H2TNVAFXX:2:11101:11174:1014_1:N:0:3 | NAATCNTCTTTTGAGTTGTCCCCATAATCACATGAGCCAGAAACAAATCGTGACTTACCCCGAGTTGGGACATATTAGGATCTCGTCATTATTATACATTATTTTAGATTTGTTTTGATGAGTGGCCTATTCCCTCTGAGTACAAGGGGCT | >NS500162:113:H2TNVAFXX:2:11101:25499:1014_1:N:0:3 | NATTANGCTTTTCCTACTAATGAACAGTTGTTGGAAGAATTCATATTTAACCTGTTTCCTGGTTGTTACGTCTGGTTTTGGTTTATCCACAAAAGGATTTAGATCCTTGCGAGTTTGAGACTTGTTATTCGGTGCTTGCTTGAAGACGGTT |
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46: Archive with clustering results from dataset 45
51,389,301 lines
format: zip,
database:
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47: Contigs from dataset 45 based on clustering
386,662 sequences
format: fasta,
database:
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>CL1Contig1 (264-30.4-8033) | GTTTCCCAAGTTGTACTAACCATCCTGGTTCATTAATTATTGGGCATTGGACCCTTATCT | TTCATTAATTACAAAACACGACAACTTCATTAGAATATTTACAAATTCGACATTCTAGAA | GAATAGTCGAATACCAGCTTCTTTCCTCTGAAGTACTCCCGGCCTCTTTCATCCGGATTG | TTCTCGGTCTCTTTCACCCGAATGGTTCCCGGTCTCTTTCACCCGGATGGTTCCCGGTCT | CTTTCACCCGGATGGTTCCCGGTC |
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48: Log information of clustering based on dataset 45
17,410 lines
format: txt,
database:
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pipeline version: | d5204b9a1621 163 stable | This is clustering pipeline | GRAPH BASED CLUSTERING | ********************************************************************** |
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49: HTML summary of graph based clustering on FaJaL002R1-dataset 45
255.5 KB
format: html,
database:
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50: FaJa-bc5_S3_L002_R2_001.fasta
6,544,578 sequences
format: fasta,
database:
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Info: uploaded fasta file
>NS500162:113:H2TNVAFXX:2:11101:11646:1013_2:N:0:3 | GACACTACTTATATGGAGTAAGGTGCCTGGTTTTCACAGATCACAAGCTCCTCCAATATGTTTTCACTCAAAAGGAACTGAACATGAGTTAGAGAAGGTGGNTA | >NS500162:113:H2TNVAFXX:2:11101:11174:1014_2:N:0:3 | GAAAGACGCAACGACGTCTCCTAGCCCCTTGGGCTCGGAGGGAATAAGTCAATTCCTCGGATGACACAGTGATGTCTTCGGGCTCGGAGGGAACAAGTCGACTCNNCNN | >NS500162:113:H2TNVAFXX:2:11101:25499:1014_2:N:0:3 | ACTTGAACCAGATTTAGTGATTTACCAAATCATTACTTTCGCTATAGTATTCTAGACCTGTCCACATGCAAATTTAAACACCTTCCTTTCCCCACTTGATTCAGN |
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52: Contigs from dataset 50 based on clustering
465,205 sequences
format: fasta,
database:
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>CL1Contig1 (322-8.2-2639) | AAATTCAATAAATATAAAATAATTTAATTTTTCTTTTATTATTATTGAGTAAGATTAATA | ACCTTTTGGGTAAGGTCCAAAGTAGCAACATAACCTTATATAGGTTATAATTAAATTTTC | TCAATTTAAGAAAATAATGCCATTACTTTTATTATTTGGCTAATATAAATTTCCAACTTC | ATATTTAACCAAATAAATCGTTTAAGTCCTAACTTGACTTTAAAAGTAGTTTTCCTTATT | ACTTTTTATCCATTATTATTTTAGAAATAGATTTTAGACAAGAAGTAATTAAAAAATTTC |
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53: Log information of clustering based on dataset 50
18,252 lines
format: txt,
database:
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pipeline version: | d5204b9a1621 163 stable | This is clustering pipeline | GRAPH BASED CLUSTERING | ********************************************************************** |
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54: HTML summary of graph based clustering on dataset 50
270.6 KB
format: html,
database:
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59: RT Protein domain search on FaJaL2R1dataset 47
8,256,703 lines
format: fasty36,
database:
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Info: Fallopia japonica
fasty36 -m 3 -m9 -b 1 -H -q -O output.part.0 - /mnt/raid_galaxy/home/galaxy/galaxy-dist/tool-data/domains/TE_domains_newest_RT | FASTY compares a DNA sequence to a protein sequence data bank version 36.06 Sep, 2010 | Please cite: | Pearson et al, Genomics (1997) 46:24-36 | Query: CL1Contig1, 264 aa |
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60: RT domain search on dataset MuAuL002R1
9,482,610 lines
format: fasty36,
database:
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fasty36 -m 3 -m9 -b 1 -H -q -O output.part.0 - /mnt/raid_galaxy/home/galaxy/galaxy-dist/tool-data/domains/TE_domains_newest_RT | FASTY compares a DNA sequence to a protein sequence data bank version 36.06 Sep, 2010 | Please cite: | Pearson et al, Genomics (1997) 46:24-36 | Query: CL1Contig1, 365 aa |
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61: CHDII domain search on dataset FaJaL002R1
8,129,225 lines
format: fasty36,
database:
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fasty36 -m 3 -m9 -b 1 -H -q -O output.part.0 - /mnt/raid_galaxy/home/galaxy/galaxy-dist/tool-data/domains/TE_domains_newest_CHDII | FASTY compares a DNA sequence to a protein sequence data bank version 36.06 Sep, 2010 | Please cite: | Pearson et al, Genomics (1997) 46:24-36 | Query: CL1Contig1, 264 aa |
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62: Protein domain search on dataset 37
9,346,803 lines
format: fasty36,
database:
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fasty36 -m 3 -m9 -b 1 -H -q -O output.part.0 - /mnt/raid_galaxy/home/galaxy/galaxy-dist/tool-data/domains/TE_domains_newest_CHDII | FASTY compares a DNA sequence to a protein sequence data bank version 36.06 Sep, 2010 | Please cite: | Pearson et al, Genomics (1997) 46:24-36 | Query: CL1Contig1, 365 aa |
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75: transfer of dataset 25 to ftp server status
8 lines
format: txt,
database:
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data set: MuAu-bc6_S4_L002_R1_001.fasta | size of dataset : 1104029635 bytes | transfer started | Mon, 11 Jul 2016 12:18:06 | data set was successfully transfered to ftp server | Mon, 11 Jul 2016 12:18:08 |
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76: transfer of dataset 36 to ftp server status
8 lines
format: txt,
database:
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data set: Archive with clustering results from dataset 25 | size of dataset : 17029960741 bytes | transfer started | Mon, 11 Jul 2016 12:19:08 | data set was successfully transfered to ftp server | Mon, 11 Jul 2016 12:20:01 |
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77: transfer of dataset 37 to ftp server status
8 lines
format: txt,
database:
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data set: Contigs from dataset 25 based on clustering | size of dataset : 107089084 bytes | transfer started | Mon, 11 Jul 2016 12:19:47 | data set was successfully transfered to ftp server | Mon, 11 Jul 2016 12:19:47 |
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78: transfer of dataset 45 to ftp server status
8 lines
format: txt,
database:
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data set: FaJa-bc5_S3_L002_R1_001.fasta | size of dataset : 1326303492 bytes | transfer started | Mon, 11 Jul 2016 13:18:25 | data set was successfully transfered to ftp server | Mon, 11 Jul 2016 13:18:27 |
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80: transfer of dataset 46 to ftp server status
8 lines
format: txt,
database:
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data set: Archive with clustering results from dataset 45 | size of dataset : 14559055820 bytes | transfer started | Mon, 11 Jul 2016 13:20:33 | data set was successfully transfered to ftp server | Mon, 11 Jul 2016 13:21:37 |
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81: transfer of dataset 47 to ftp server status
8 lines
format: txt,
database:
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data set: Contigs from dataset 45 based on clustering | size of dataset : 96082925 bytes | transfer started | Mon, 11 Jul 2016 13:21:37 | data set was successfully transfered to ftp server | Mon, 11 Jul 2016 13:21:37 |
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82: transfer of dataset 52 to ftp server status
8 lines
format: txt,
database:
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data set: Contigs from dataset 50 based on clustering | size of dataset : 115533811 bytes | transfer started | Mon, 11 Jul 2016 13:22:42 | data set was successfully transfered to ftp server | Mon, 11 Jul 2016 13:22:42 |
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83: transfer of dataset 50 to ftp server status
8 lines
format: txt,
database:
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data set: FaJa-bc5_S3_L002_R2_001.fasta | size of dataset : 1325900366 bytes | transfer started | Mon, 11 Jul 2016 13:33:31 | data set was successfully transfered to ftp server | Mon, 11 Jul 2016 13:33:34 |
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